Editing Efficiency Prediction

CRISPR与TnpB双系统的设计平台CRISPy-web

TnpB Editing Efficiency Predictor (TEEP): https://go.tnpb.app/

Protein Mutational Effect Predictor (ProMEP): https://github.com/wenjiegroup/ProMEP

EVOLVEpro: https://github.com/mat10d/EvolvePro

AiCE: High-fitness mutation prediction tool: https://github.com/ScorpioLea/AiCE

Bridge RNA Design Tool: https://arcinstitute.org/tools/bridge

CRISPR

CRISPR Integrated DNA Technologies | IDT

Chopchop: http://chopchop.cbu.uib.no/

CCTOP: CCTop – CRISPR/Cas9 target online predictor (uni-heidelberg.de)

CRISPR-CAS++ (paris-saclay.fr)

CRISPRone (indiana.edu)

CRISPRmap (uni-freiburg.de)

CRISPRDetect (otago.ac.nz)

CRISPRloci – CRISPR-Cas annotation (uni-freiburg.de)

crisprSQL – CRISPR off-target database

CRISPR RGEN Tools (rgenome.net)

https://chopchop.cbu.uib.no/

https://benchling.com/pub/c2c2

http://crispr-analyzer.dkfz.de/

http://www.e-crisp.org/E-CRISP/

http://crispresso.pinellolab.org/submission

http://guides.sanjanalab.org/#/

https://www.crisprindelphi.design/

Tools – brounslab

Addgene: CRISPR Plasmids and Resources

TALEN

Tools | TAL Effector Nucleotide Targeter 2.0 (cornell.edu)

http://www.e-talen.org/

Mojo Hand (talendesign.org)

TALENoffer – Jstacs

SAPTA TAL Targeter | Tools | tDnA (rice.edu)

ZNF

DeepZF

ZFNGenome

ZiF PREDICTION

Zibase

Zinc Finger Tools (scripps.edu)

The Zinc Finger Consortium | Software Tools (zincfingers.org)

GitHub – OrensteinLab/DeepZF

Predicting DNA Recognition – Main Menu (princeton.edu)